PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_75808.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 195aa MW: 22918.2 Da PI: 8.9599 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.6 | 2.3e-19 | 25 | 118 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y+ YA+++GF vr kk + +ge +++ +vC + + ++k + + er +++++rt+C ++ vk++ d+ w+vt++ +HnH+l MLOC_75808.2 25 HYKMYARQTGFGVRYCFRKKAEASGELIRASLVCHRAALKIKKKVDtqnpqpISPERWRNTTERTNCPTRMSVKRR-DNSWVVTEIIDDHNHPLI 118 6************************************999888888677777777788******************.9***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-17 | 25 | 118 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEVMPTPQQP TTTMRFDTLE DAEKHYKMYA RQTGFGVRYC FRKKAEASGE LIRASLVCHR 60 AALKIKKKVD TQNPQPISPE RWRNTTERTN CPTRMSVKRR DNSWVVTEII DDHNHPLIKK 120 WSLTGYLQSH RHIPEEEQQF VKLLHSCNLE PSRQMQLLTE LHGQCEAFGY TNKDLANLLA 180 KFWAEHKYSD MQDTI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_75808.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M0Z2D2 | 1e-147 | M0Z2D2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_75808.1 | 1e-148 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-15 | FAR1-related sequence 5 |