PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_75808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 247aa MW: 28582 Da PI: 6.7918 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.8 | 4.1e-19 | 77 | 170 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y+ YA+++GF vr kk + +ge +++ +vC + + ++k + + er +++++rt+C ++ vk++ d+ w+vt++ +HnH+l MLOC_75808.1 77 HYKMYARQTGFGVRYCFRKKAEASGELIRASLVCHRAALKIKKKVDtqnpqpISPERWRNTTERTNCPTRMSVKRR-DNSWVVTEIIDDHNHPLI 170 6************************************999888888677777777788******************.9***************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.7E-17 | 77 | 170 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MDSHFLAAHD TDRETVSASR TLLQQPANTE QTLDASSNHT PNDDNANEDE GIMEVMPTPQ 60 QPTTTMRFDT LEDAEKHYKM YARQTGFGVR YCFRKKAEAS GELIRASLVC HRAALKIKKK 120 VDTQNPQPIS PERWRNTTER TNCPTRMSVK RRDNSWVVTE IIDDHNHPLI KKWSLTGYLQ 180 SHRHIPEEEQ QFVKLLHSCN LEPSRQMQLL TELHGQCEAF GYTNKDLANL LAKFWAEHKY 240 SDMQDTI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_75808.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | M0Z2D2 | 0.0 | M0Z2D2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_75808.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-15 | FAR1-related sequence 5 |