PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_75795.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 211aa MW: 24427.9 Da PI: 8.8655 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116.8 | 2.2e-36 | 43 | 185 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 lp+G++F+Ptd+el+ e+L++kv+++ +++ +i+++d i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ MLOC_75795.5 43 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTMDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvhKG 135 799************.99******999667544333..3444433445**********.455567899******************75666664433 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l MLOC_75795.5 136 ETRWHKTGKTRPVMA-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 185 778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-40 | 38 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.216 | 43 | 204 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-17 | 44 | 185 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MNRGHISSSE LIDAKLEEHR ISTARHCPNC RHKLDCKPDW LGLPAGVKFD PTDQELIEHL 60 EAKVREEGSR SHPLIDEFIP TIDGEDGICY THPEKLPGVT MDGLSKHFFH RPSKAYTTGT 120 RKRRKIQTEC DVHKGETRWH KTGKTRPVMA NGRQKGCKKI LVLYTNFGKH RKPEKTNWVM 180 HQYHLGDLEE EKEGELVVCK IFYQTQPRQL V |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-14 | 41 | 185 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_75795.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK061716 | 0.0 | AK061716.1 Oryza sativa Japonica Group cDNA clone:001-037-H07, full insert sequence. | |||
GenBank | AK106152 | 0.0 | AK106152.1 Oryza sativa Japonica Group cDNA clone:001-207-H11, full insert sequence. | |||
GenBank | EU541472 | 0.0 | EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190512.1 | 1e-155 | uncharacterized protein LOC109776267 isoform X2 | ||||
Swissprot | Q9M0F8 | 1e-120 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A287KC66 | 1e-154 | A0A287KC66_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287KC71 | 1e-156 | A0A287KC71_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A446N6E3 | 1e-155 | A0A446N6E3_TRITD; Uncharacterized protein | ||||
STRING | Traes_3B_9683142DA.1 | 1e-153 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-114 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
---|---|---|---|
|