PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75795.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 437aa    MW: 48943.7 Da    PI: 7.4659
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75795.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.21.3e-35441861128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 
                   lp+G++F+Ptd+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          
  MLOC_75795.4  44 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTMDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvhKG 136
                   799************.99******999667544333..3444433445**********.455567899******************75666664433 PP

           NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                   + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  MLOC_75795.4 137 ETRWHKTGKTRPVMA-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 186
                   778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-4038205IPR003441NAC domain
PROSITE profilePS5100534.21644205IPR003441NAC domain
PfamPF023653.0E-1645186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MNRGHISSSE LIDAKLEEHR ISTARHCPNC RHKLDCKPKD WLGLPAGVKF DPTDQELIEH  60
LEAKVREEGS RSHPLIDEFI PTIDGEDGIC YTHPEKLPGV TMDGLSKHFF HRPSKAYTTG  120
TRKRRKIQTE CDVHKGETRW HKTGKTRPVM ANGRQKGCKK ILVLYTNFGK HRKPEKTNWV  180
MHQYHLGDLE EEKEGELVVC KIFYQTQPRQ CSWSASSDRG GAGGAVAIAA AAAVTVQEQR  240
RRDSGSGSSS SRDHEALSAT SYPAGYAMAA AVEMQHLKHS GDHFSFAPFR KSFEEVGIGG  300
DQVPSDHLGR SEHQQHAGQE QQPHRPDLAT TAVPATAFLV SRPTNPVSAT VPPPLQHTSV  360
VLDHDQFHVP AIFLHHDKFQ NMQQQQQQKV DRRSAGLEEL VMGCTSTCTK GETSIPHSQE  420
TEWPYPYWPP DNQDHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-134218613140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75795.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190511.10.0uncharacterized protein LOC109776267 isoform X1
SwissprotQ9M0F81e-148NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A287KC420.0A0A287KC42_HORVV; Uncharacterized protein
STRINGMLOC_75795.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-115NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]