PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_75795.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 469aa MW: 52310.5 Da PI: 7.7447 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114 | 1.5e-35 | 76 | 218 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 lp+G++F+Ptd+el+ e+L++kv+++ +++ +i+++d i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ MLOC_75795.1 76 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTMDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvhKG 168 799************.99******999667544333..3444433445**********.455567899******************75666664433 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l MLOC_75795.1 169 ETRWHKTGKTRPVMA-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 218 778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-40 | 70 | 237 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.216 | 76 | 237 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-16 | 77 | 218 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MASRVLNSAR LGPLQRAHAW TPSPAAAREP GDMNRGHISS SELIDAKLEE HRISTARHCP 60 NCRHKLDCKP KDWLGLPAGV KFDPTDQELI EHLEAKVREE GSRSHPLIDE FIPTIDGEDG 120 ICYTHPEKLP GVTMDGLSKH FFHRPSKAYT TGTRKRRKIQ TECDVHKGET RWHKTGKTRP 180 VMANGRQKGC KKILVLYTNF GKHRKPEKTN WVMHQYHLGD LEEEKEGELV VCKIFYQTQP 240 RQCSWSASSD RGGAGGAVAI AAAAAVTVQE QRRRDSGSGS SSSRDHEALS ATSYPAGYAM 300 AAAVEMQHLK HSGDHFSFAP FRKSFEEVGI GGDQVPSDHL GRSEHQQHAG QEQQPHRPDL 360 ATTAVPATAF LVSRPTNPVS ATVPPPLQHT SVVLDHDQFH VPAIFLHHDK FQNMQQQQQQ 420 KVDRRSAGLE ELVMGCTSTC TKGETSIPHS QETEWPYPYW PPDNQDHHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-13 | 74 | 218 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_75795.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190511.1 | 0.0 | uncharacterized protein LOC109776267 isoform X1 | ||||
Swissprot | Q9M0F8 | 1e-148 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A287KC42 | 0.0 | A0A287KC42_HORVV; Uncharacterized protein | ||||
STRING | MLOC_75795.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-115 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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