PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_75723.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 193aa MW: 22244.2 Da PI: 7.0788 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.5 | 8.8e-17 | 119 | 192 | 3 | 86 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 k++ + +l l++p +f eh + ++++l+l de+ ++++v++ r +s++ l +GW+eFv +n+L egD +vF+l++ MLOC_75723.1 119 KTM--PQSL--TSLYIPAQFSMEHL--PDRGMKLVLVDEEEEEFKVQY--RPHSSS--LVTGWSEFVMDNELVEGDCLVFQLIR 192 444..3333..449******99995..34899****************..999988..778********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.16E-18 | 110 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-18 | 111 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.787 | 113 | 193 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.95E-18 | 115 | 193 | No hit | No description |
SMART | SM01019 | 3.4E-7 | 117 | 193 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-14 | 118 | 192 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MADANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PKLQKRKASK PRDAADDAPP 60 RRSGRIATLP EQPDYRDNVK LGTGKPRQQK EVKPDHAYAI AKAEELRDEL GSDYPTFVKT 120 MPQSLTSLYI PAQFSMEHLP DRGMKLVLVD EEEEEFKVQY RPHSSSLVTG WSEFVMDNEL 180 VEGDCLVFQL IRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_75723.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374346 | 0.0 | AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158478.1 | 1e-124 | B3 domain-containing protein Os06g0194400-like | ||||
Swissprot | Q69V36 | 1e-59 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A287HHE1 | 1e-139 | A0A287HHE1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_75723.1 | 1e-140 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-21 | B3 family protein |
Publications ? help Back to Top | |||
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