PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_75616.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 268aa MW: 29058.1 Da PI: 4.6617 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.3e-07 | 17 | 68 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqky 47 W t E++ l+ av ++G+ +W+++a +++ g+t+ +c++r++++ MLOC_75616.2 17 WGTLEELVLAFAVCRHGTASWDSVATEVQarsplaarPGLTPGSCRLRFRQL 68 9999*********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.53E-5 | 11 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-6 | 17 | 68 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.017 | 17 | 69 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-4 | 17 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MAGGSDGPDV SAGGEIWGTL EELVLAFAVC RHGTASWDSV ATEVQARSPL AARPGLTPGS 60 CRLRFRQLHR RFSAGGRAED EEEEGEVGPE AEAEASAVDG WLDELRRLRV AELRREVERC 120 DLSIGTLQSK VELMKEERER SLSSGEAKPE GVTGDENLSS EEPGQSCRES NSTDLKRPGA 180 AKAEEAAKEE LSGESKESAV SLQCRRRKAS AEEESDEPLA ALLDRVAARF GPVFDQLQES 240 QVKNLRQNYR PRAARPVPFP SPSSAAAR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_75616.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356536 | 0.0 | AK356536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1036A11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188003.1 | 1e-129 | uncharacterized protein LOC109773708 | ||||
TrEMBL | M0Z1Y8 | 0.0 | M0Z1Y8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_75616.3 | 1e-140 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60110.1 | 2e-16 | DNA-binding bromodomain-containing protein |