PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75519.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 418aa    MW: 46039.5 Da    PI: 4.7132
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75519.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35441342101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws+ +nsfvv+d++ fa+ +Lp++Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++i+
  MLOC_75519.1  44 FLTKTYDMVDDPNTDSVVSWSAGNNSFVVWDPHAFATVLLPRHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKNIR 131
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
  MLOC_75519.1 132 RRK 134
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.9E-6340133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.31E-3640133IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-3940133IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.8E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEDPVPSLVK EEEEEGAHGR GGSPGVGAAP RPMEGLHDAG PPPFLTKTYD MVDDPNTDSV  60
VSWSAGNNSF VVWDPHAFAT VLLPRHFKHS NFSSFVRQLN TYGFRKVDPD RWEFANEGFL  120
RGQRHLLKNI RRRKPPAHTA SNQQSLGSYL EVGHFGNDAE IDRLKRDKQL LMAEVVKLRQ  180
EQQNTKAHLK AMEDRLRGTE QKQQQMTSFM ARVLRNPEFL KQLISRNGMR KELHEAISKK  240
RRRRIDGGPE AYDVGASSSS LEQESPVVFD SHGSVELLAD VSVPVELLAD GIPPDLEGSV  300
ELLADGIPPD LEGSVALLAD GIPPDLEGSV ELLVDGIPSD LGGSGIDANG VTEPHDFGLG  360
TCEPQQNRVP GLFRDSFWEE LLNKGLSDES DEPVNVDGMD VLSEKMGYLI PNSPTQTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-263913312120Heat shock factor protein 1
5d5u_B4e-263913321129Heat shock factor protein 1
5d5v_B4e-263913321129Heat shock factor protein 1
5d5v_D4e-263913321129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243KKRRRR
2239244KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75519.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591220.0AK359122.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090C03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146162.10.0heat stress transcription factor A-2b-like
SwissprotQ6VBB21e-179HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLM0Z1Q70.0M0Z1Q7_HORVV; Uncharacterized protein
STRINGMLOC_75519.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-103heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]