PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75497.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 531aa    MW: 57976.9 Da    PI: 7.5332
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75497.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00031032123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C++C+ksF++   L  H+++H
  MLOC_75497.1 10 HVCSKCHKSFPSGRALGGHMSRH 32
                  79*******************99 PP
2zf-C2H2140.000147293223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C+ C+k+ s  ++L++H+r H
  MLOC_75497.1 72 QCQLCSKVSSACDSLRKHMREH 93
                  7*******************99 PP
3zf-C2H211.50.00094425447123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ CgksF +   L  H+r H
  MLOC_75497.1 425 HQCNACGKSFGSGVALGGHMRHH 447
                   79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.581037IPR007087Zinc finger, C2H2
PfamPF139122.4E-91034IPR007087Zinc finger, C2H2
SMARTSM003550.0331032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1827198IPR007087Zinc finger, C2H2
SMARTSM003550.347193IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.74E-87293No hitNo description
SuperFamilySSF576675.74E-8420447No hitNo description
Gene3DG3DSA:3.30.160.606.5E-4423447IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-9424448IPR007087Zinc finger, C2H2
SMARTSM003550.04425447IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305425452IPR007087Zinc finger, C2H2
PROSITE patternPS000280427447IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MAPRGRPPKH VCSKCHKSFP SGRALGGHMS RHWRKAKQPK GTPSPPTTVV DLHVSLLSPS  60
DEETLLRSSG TQCQLCSKVS SACDSLRKHM REHSEKNVLS RPVEEAAGPM EALAIAGGGY  120
NVLISPVKRK RSKRGAPPLK FNEMDAAASL LLLSEHSSMI SAYADCYAEV MGSWPPNVSK  180
DMKLNASDHL LVRSAEFKKP KGCKCSAYDI CYGQCDKDNN LIPSVAKDKT SVPDIPNNSA  240
CEDCFGQCET DSSLIPNVSQ DKTLIPNIPK NSAYEDCFGQ CKKDINLIPN VPKDKTSIPD  300
IPNNSACEDC FEQCETDSSL IPNVAQDKTL IPNIPKNPAS EDCFGQCEKD SSLTPNVYKK  360
GRSLIANVPE KDNNTLISID LEEVELNVLD HVLAGDAELR KKPRTDNSVE MKCADLSAAV  420
KVKRHQCNAC GKSFGSGVAL GGHMRHHLPR SNDRRHGFAE GPDSVAMKEQ KQKLELDTKF  480
LDLRLPGLTD ITIFSGLKSE PEPWRVAGSV HWDNAGCALL SELPQSLHFS V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398404LRKKPRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75497.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496280.0AK249628.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf40p20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164841.11e-151uncharacterized protein LOC109750291
TrEMBLA0A446SRM70.0A0A446SRM7_TRITD; Uncharacterized protein
STRINGMLOC_75497.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229