PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_75367.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 146aa MW: 16887.2 Da PI: 10.1259 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.2 | 1.8e-20 | 55 | 137 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fYn+YA GF+ ++ +++ + +k ++ C+++gk++ + + +++r++++ ++t+C+ak+ vk+ +g+we t++++eHnH+l+p MLOC_75367.2 55 RFYNTYALLKGFEAKRGTNYMR------KKFHLICNRSGKSKATPDL-HRKRKRKSIEKTNCQAKVIVKLV-KGQWEFTTVRNEHNHPLCP 137 5*****************9998......4678***********9988.9999*******************.9****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-18 | 55 | 137 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MLRSNTSSET DSDSSSGSDS DSELGKYFYP QIEQLEMAKQ PEPGMKFQTL EDAHRFYNTY 60 ALLKGFEAKR GTNYMRKKFH LICNRSGKSK ATPDLHRKRK RKSIEKTNCQ AKVIVKLVKG 120 QWEFTTVRNE HNHPLCPSSS LTKFYL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 101 | RKRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_75367.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360162 | 0.0 | AK360162.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111O12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161795.1 | 7e-80 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A287QHC2 | 1e-101 | A0A287QHC2_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287QHD2 | 1e-103 | A0A287QHD2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_75367.1 | 1e-99 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 1e-13 | FAR1-related sequence 8 |