PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75367.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 717aa    MW: 83481.5 Da    PI: 6.8741
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75367.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1613.7e-19116198191
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   +fYn+YA   GF+ ++ +++ +      +k ++ C+++gk++ + +  +++r++++ ++t+C+ak+ vk+  +g+we t++++eHnH+l+p
  MLOC_75367.1 116 RFYNTYALLKGFEAKRGTNYMR------KKFHLICNRSGKSKATPDL-HRKRKRKSIEKTNCQAKVIVKLV-KGQWEFTTVRNEHNHPLCP 198
                   5*****************9998......4678***********9988.9999*******************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-17116198IPR004330FAR1 DNA binding domain
PfamPF105511.1E-28320411IPR018289MULE transposase domain
PROSITE profilePS509669.174602638IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MTEGTLQPAG DNDQDPSSDS IEKNTDGLLA DGRDQLTNSV YHPLQQAEEE NQLHDNVESN  60
EMLRSNTSSE TDSDSSSGSD SDSELGKYFY PQIEQLEMAK QPEPGMKFQT LEDAHRFYNT  120
YALLKGFEAK RGTNYMRKKF HLICNRSGKS KATPDLHRKR KRKSIEKTNC QAKVIVKLVK  180
GQWEFTTVRN EHNHPLCPSS SLTKFYLSHK HISTEERSFL KVLQRTRIPP NKVMKIFRRM  240
RGSFGSIPFK KKDGTNLLCA EQHRKENSDV GKTLMYFKEK ELQDPSFQCM KQTDEDNIVH  300
SVFWTDERSM MDYEIFGDSL LFDATYSTDR HNMLFAPIIG INNHGRTLLL GCALLHDENA  360
ETYKWMFETL LHVMGGKMPV SIMTNQDEAL AKAIAEVMPQ VRHRLCKWDV LEKAQQNISA  420
FMAESGNIKA DLDRLVDNSL TEKEFEEGWG ALIERYGASQ NEYLQLLWQR RKNWVPVYFR  480
QDFYPFVQSH GCGEGMNLLF KDYVLSIDRI EKFIERYDEI HKNIIKTDEE DRLQTGAVPS  540
CFSLQPIEKH AANIYTRQIF LKVQRELLHS TAFNVQEIQR GAMYRLNKVF NYENPEFDRN  600
NFEVQVESAT NAFKCQCSKF TRDGILCCHI FRLFTQFGIN QIPEQYIVPR WTEKFREEKE  660
KQYKEKCSEK MDSTMRYTNF MTKMADLGKT ICSDGAKYDA FMLEVDKIQE NFATAQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75367.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601620.0AK360162.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111O12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161795.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A287QHB90.0A0A287QHB9_HORVV; Uncharacterized protein
STRINGMLOC_75367.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-87FAR1-related sequence 5