PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75135.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family RAV
Protein Properties Length: 362aa    MW: 39278.4 Da    PI: 9.79
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75135.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.61.9e-1060108155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s++kGV   + +grW ++I++      r +r++lg+f   + Aa+a++ a ++++g
  MLOC_75135.1  60 SRFKGVVPQP-NGRWGSQIYE------RhARVWLGTFPDQDSAARAYDVASLRYRG 108
                   689***9788.8********9......44*************************98 PP
2B393.21.8e-29174269187
                   EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                   f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ +  
  MLOC_75135.1 174 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkctaetTTTTGNGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSSFVREKGLGAGDSIVFSSSAY 269
                   89**************************999987744555899************************************************95443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-1560117IPR016177DNA-binding domain
PfamPF008476.6E-660108IPR001471AP2/ERF domain
CDDcd000181.78E-2260116No hitNo description
SMARTSM003802.0E-2161122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-1961116IPR001471AP2/ERF domain
PROSITE profilePS5103220.33661116IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.4E-37170285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-29171277IPR015300DNA-binding pseudobarrel domain
CDDcd100173.71E-29172264No hitNo description
SMARTSM010191.4E-23174282IPR003340B3 DNA binding domain
PfamPF023622.8E-27174275IPR003340B3 DNA binding domain
PROSITE profilePS5086313.451174283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGMEILSSTV EHCSQYSSSA STATTESGAA GRSTTALSLP VAITDESVTS RSASAQPASS  60
RFKGVVPQPN GRWGSQIYER HARVWLGTFP DQDSAARAYD VASLRYRGRD AATNFPCAAA  120
EAELAFLTAH SKAEIVDMLR KHTYADELRQ GLRRGRGMGA RAQPTPSWAR VPLFEKAVTP  180
SDVGKLNRLV VPKQHAEKHF PLKCTAETTT TTGNGVLLNF EDGEGKVWRF RYSYWNSSQS  240
YVLTKGWSSF VREKGLGAGD SIVFSSSAYG QEKQLFINCK KNTTMNGGKT ALPLPVVETA  300
KGEQDHVVKL FGVDIAGVKR VRAATGELGP PELFKRQSVA HGCGRMNYIC YSIGTIGPLM  360
LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4617328013115DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75135.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3633740.0AK363374.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2014O15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191173.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020200371.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020201146.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
SwissprotQ9AWS01e-132Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLM0Z0M60.0M0Z0M6_HORVV; Uncharacterized protein
STRINGMLOC_75135.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-89related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]