PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_74813.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Trihelix | ||||||||
Protein Properties | Length: 227aa MW: 25272.1 Da PI: 7.6269 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.8 | 6.7e-14 | 34 | 82 | 37 | 87 |
trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 k++e g+ rs+k+Ckek+en+ k+y+++keg+ +r ++ +++++f++lea MLOC_74813.5 34 KLAELGYCRSAKKCKEKFENVDKYYRRTKEGRAGR--QDGKNYRFFEELEA 82 6789*****************************97..66678******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.5E-10 | 34 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
RGDGGAHQDP VGDGRRLPQR RPQGPRLGGG LQVKLAELGY CRSAKKCKEK FENVDKYYRR 60 TKEGRAGRQD GKNYRFFEEL EALHAAAPQH NHPMATATTI LPDPRPLAMA PAYPAAGLPD 120 LSLSSNSESE SDDGSDEGED QAGGGGRSNE SMMALFEGMI KQITEKQDAT QRLFLETLEK 180 WEADRTAREE AWRRQELARI SREREQHARE RAAAAARDAA LIAFLQR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00243 | DAP | Transfer from AT1G76880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_74813.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375494 | 0.0 | AK375494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095N08. | |||
GenBank | AK376129 | 0.0 | AK376129.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3115F22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184216.1 | 6e-86 | trihelix transcription factor GTL1-like | ||||
Refseq | XP_020184217.1 | 6e-86 | trihelix transcription factor GTL1-like | ||||
TrEMBL | F2E8S6 | 1e-134 | F2E8S6_HORVV; Predicted protein (Fragment) | ||||
STRING | MLOC_74813.2 | 1e-135 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 6e-27 | Trihelix family protein |