PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_74813.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Trihelix | ||||||||
Protein Properties | Length: 227aa MW: 25285.5 Da PI: 10.7267 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 108.8 | 3.6e-34 | 3 | 88 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++r e++e+ ++ +k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +++s+tcpyf+ql+a MLOC_74813.3 3 RWPKEEVHALIQLRMEKDEHCQDMGAKGPLWEDISAGMRRIGYNRSSKRCKEKWENINKYFKKVKESNKRR-PDDSKTCPYFHQLDA 88 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.933 | 1 | 60 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.39E-24 | 2 | 67 | No hit | No description |
Pfam | PF13837 | 2.1E-22 | 3 | 89 | No hit | No description |
SuperFamily | SSF46689 | 3.81E-5 | 3 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-4 | 3 | 59 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MSRWPKEEVH ALIQLRMEKD EHCQDMGAKG PLWEDISAGM RRIGYNRSSK RCKEKWENIN 60 KYFKKVKESN KRRPDDSKTC PYFHQLDAIY RKKQFAVANA GGGCSGTASG NTLAAVNAAA 120 SEKENHPWRE LEGKVSNDFG RRYRVGGGSS DAPPGDAEMA AASTVLDAVG TSKRSPKTTC 180 SQWSQTCSPS RRSLRRRTRR TATTSKRTTP TTATMTTTAK TATRMTK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00243 | DAP | Transfer from AT1G76880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_74813.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372550 | 0.0 | AK372550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3004N20. | |||
GenBank | AK375494 | 0.0 | AK375494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095N08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184216.1 | 1e-106 | trihelix transcription factor GTL1-like | ||||
Refseq | XP_020184217.1 | 1e-106 | trihelix transcription factor GTL1-like | ||||
TrEMBL | M0YZH6 | 1e-128 | M0YZH6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_74813.2 | 1e-127 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 4e-47 | Trihelix family protein |