PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_74705.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GRAS

Protein Properties

Length: 695aa MW: 76552.5 Da PI: 7.9264

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_74705.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	328.8	1e-100	310	685	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++ L++cA+av++gd + ++lL+++++++s +gd++qRla +f+e+L+arla+++s++y++l +++ts + e l a+kl+ +s + k+ ++ MLOC_74705.1 310 LRTMLIHCAQAVATGDRRGSNELLKQIKQHSSAKGDATQRLAYCFAEGLEARLAGTGSHVYQSLMAKSTS---VGEFLRAYKLYMAASSFRKVNFIF 403 5789**********************************************************999999...9******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 + I++a+ g++r+Hi+D+++++G+QWp Llq La+R++gpp +RiTg++ p++g + ++eetg+rL+k A+e+gvpf+++ + ++e+++ e MLOC_74705.1 404 VGKIIMDAMVGKSRLHIVDYNVQYGFQWPGLLQMLAEREGGPPDVRITGIDLPQPGfrPAFQIEETGRRLSKCAREFGVPFKYHG-IPAKFETVHAE 499 ***************************************************999***********************.799**** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +L+++p+E+l+V ++ +l+desv ++ +rd vL+ +++++P+v++ + + ++++ F++rf eal ysa fd+l+a++pr++++r MLOC_74705.1 500 DLNIDPDEVLIVTSQSGFSNLMDESVIMDRqdipsPRDMVLSNIRKMRPDVFIDCVVNGTYGAPFFVTRFREALFSYSAQFDMLDATIPRDNDDRLL 596 ******************99887665555669********************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +Er ++g+ + nv+acega+r+ r et+++W+ r ++aG+++vpls ++k ++ +++ + + + ++ ++ +l++gWk+r L+++S W MLOC_74705.1 597 IERDIFGPCALNVIACEGADRVDRPETYKQWQVRGHRAGLRQVPLSPAVVKLVRDKVKTLYHKDFLIDVDNRWLLQGWKGRVLYAMSTW 685 *********************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.195	284	666	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-98	310	685	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
TTVASSTFSS DSATGRSASS CSDSATNTGK STCSFHSTTN TAHSTSCSSS PGGLAPANPT 60 WPYDRIYLSQ PLHSPPYNAN NLFFSGVGTP TAGYFGHTPA LSKGNNDYFL APAGQNGRST 120 GMQSFAALSN SSAAKDAKTL SNNGGSCRGG PCTPASAFFN GQTDGDVDML NMAFRKGMEE 180 ANKFLPTTNT LDAISNKPVL RDLTGDQLKK EEVDRLRMSM FSNGRGRKNR HGAEDLEAEV 240 GRRSKLMMPE QEDTGVGEMV EEIMLHGHEI IMKGIEDLHI AMDTEAEKNH RKGASKAARG 300 RRGASEVVDL RTMLIHCAQA VATGDRRGSN ELLKQIKQHS SAKGDATQRL AYCFAEGLEA 360 RLAGTGSHVY QSLMAKSTSV GEFLRAYKLY MAASSFRKVN FIFVGKIIMD AMVGKSRLHI 420 VDYNVQYGFQ WPGLLQMLAE REGGPPDVRI TGIDLPQPGF RPAFQIEETG RRLSKCAREF 480 GVPFKYHGIP AKFETVHAED LNIDPDEVLI VTSQSGFSNL MDESVIMDRQ DIPSPRDMVL 540 SNIRKMRPDV FIDCVVNGTY GAPFFVTRFR EALFSYSAQF DMLDATIPRD NDDRLLIERD 600 IFGPCALNVI ACEGADRVDR PETYKQWQVR GHRAGLRQVP LSPAVVKLVR DKVKTLYHKD 660 FLIDVDNRWL LQGWKGRVLY AMSTWVAADH DYSKF

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

TTVASSTFSS DSATGRSASS CSDSATNTGK STCSFHSTTN TAHSTSCSSS PGGLAPANPT  60
WPYDRIYLSQ PLHSPPYNAN NLFFSGVGTP TAGYFGHTPA LSKGNNDYFL APAGQNGRST  120
GMQSFAALSN SSAAKDAKTL SNNGGSCRGG PCTPASAFFN GQTDGDVDML NMAFRKGMEE  180
ANKFLPTTNT LDAISNKPVL RDLTGDQLKK EEVDRLRMSM FSNGRGRKNR HGAEDLEAEV  240
GRRSKLMMPE QEDTGVGEMV EEIMLHGHEI IMKGIEDLHI AMDTEAEKNH RKGASKAARG  300
RRGASEVVDL RTMLIHCAQA VATGDRRGSN ELLKQIKQHS SAKGDATQRL AYCFAEGLEA  360
RLAGTGSHVY QSLMAKSTSV GEFLRAYKLY MAASSFRKVN FIFVGKIIMD AMVGKSRLHI  420
VDYNVQYGFQ WPGLLQMLAE REGGPPDVRI TGIDLPQPGF RPAFQIEETG RRLSKCAREF  480
GVPFKYHGIP AKFETVHAED LNIDPDEVLI VTSQSGFSNL MDESVIMDRQ DIPSPRDMVL  540
SNIRKMRPDV FIDCVVNGTY GAPFFVTRFR EALFSYSAQF DMLDATIPRD NDDRLLIERD  600
IFGPCALNVI ACEGADRVDR PETYKQWQVR GHRAGLRQVP LSPAVVKLVR DKVKTLYHKD  660
FLIDVDNRWL LQGWKGRVLY AMSTWVAADH DYSKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-38	314	685	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_74705.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364983	0.0	AK364983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030A10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172213.1	0.0	scarecrow-like protein 34
TrEMBL	A0A287NNJ9	0.0	A0A287NNJ9_HORVV; Uncharacterized protein
STRING	MLOC_74705.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-148	GRAS family protein