PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74632.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 401aa    MW: 46112.5 Da    PI: 8.9609
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74632.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-1617971399
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  ++ + +p kf++++ +  + sk ++le ++g+ +++++  ++  +++vl++GW  F++a +Lke D +vF+++g+s f  +v +f+ 
  MLOC_74632.2 17 RHEMNIPEKFVNNFRS--RISKVMKLEAPDGNIYNIQV--TNDLNKIVLRSGWTAFASAYELKEHDLLVFRYIGDSHF--KVLIFDP 97
                  4569*******77764..4899****************..**********************************9999..9999885 PP
2B339.21.3e-122203001194
                   HHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
            B3  11 lksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                   + sg lv+ k++a+++    +e++ +tl +++  + W   l    ++g+++l++GW+ Fv  n+L+e D++vF++++ s +e+ +
  MLOC_74632.2 220 SMSGTLVICKDYASKYLP--HEDQFITLCHPRKsNIWLDHL-KVTTDGSCMLSAGWSYFVLHNKLRESDVCVFEVSK-SVGEMIM 300
                   45688***********42..344568888865516666555.5677778*************************876.5554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-20298IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-20499IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.914598IPR003340B3 DNA binding domain
CDDcd100178.48E-19696No hitNo description
SMARTSM010195.4E-9898IPR003340B3 DNA binding domain
PfamPF023624.7E-141596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-16207303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-18209304IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.659210306IPR003340B3 DNA binding domain
SMARTSM010190.0071213308IPR003340B3 DNA binding domain
CDDcd100174.26E-9219304No hitNo description
PfamPF023624.8E-10219300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDDRQKHFLR LMVSDFRHEM NIPEKFVNNF RSRISKVMKL EAPDGNIYNI QVTNDLNKIV  60
LRSGWTAFAS AYELKEHDLL VFRYIGDSHF KVLIFDPSGR EKQLFHIVMN HAPNVPDTGI  120
CHDPSFFRET RRRDCESRDN NTRKTKKMTP LDSPSRRSAE GVTSPEDTMN SGIPPETTEP  180
RYVLATGCNL TTAQKAQIDA LVKKVRPVIP FYITAINKTS MSGTLVICKD YASKYLPHED  240
QFITLCHPRK SNIWLDHLKV TTDGSCMLSA GWSYFVLHNK LRESDVCVFE VSKSVGEMIM  300
VVHSLEGDHH LQEKEPESQN KCNYPVKGKA NKEEESDKKH PKSKSNYYYS RYAEGLTGEE  360
QEVIFRSVLI QQGNVVYVTV LGKNNVRSRR NSLDVPWKFR G
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74632.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571060.0AK357106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1046E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168823.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A287QHQ80.0A0A287QHQ8_HORVV; Uncharacterized protein
STRINGMLOC_74632.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-19B3 family protein