PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74632.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 678aa    MW: 78474.4 Da    PI: 8.5301
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74632.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.2e-15511321098
                   HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++++  + +p kf+++++g+   s  ++le ++g+ ++v+    k  +++vl++GW  Fv+  +Lk+g f+vF+++g+s f  +v +f+
  MLOC_74632.1  51 NFQE-KMAIPQKFVQNFKGQ--ISEAIKLEAPDGNIYNVEA--IKDLNKIVLGSGWGVFVRFYKLKAGYFLVFRYIGDSHF--KVLIFD 132
                   4444.499******888888..6779***************..999999****************************9999..887775 PP
2B350.82.9e-162112911399
                   TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   ++ + +p kf++++ +  + sk ++le ++g+ +++++  ++  +++vl++GW  F++a +Lke D +vF+++g+s f  +v +f+ 
  MLOC_74632.1 211 RHEMNIPEKFVNNFRS--RISKVMKLEAPDGNIYNIQV--TNDLNKIVLRSGWTAFASAYELKEHDLLVFRYIGDSHF--KVLIFDP 291
                   4569*******77764..4899****************..**********************************9999..9999885 PP
3B338.12.8e-124144941194
                   HHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
            B3  11 lksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                   + sg lv+ k++a+++    +e++ +tl +++  + W   l    ++g+++l++GW+ Fv  n+L+e D++vF++++ s +e+ +
  MLOC_74632.1 414 SMSGTLVICKDYASKYLP--HEDQFITLCHPRKsNIWLDHL-KVTTDGSCMLSAGWSYFVLHNKLRESDVCVFEVSK-SVGEMIM 494
                   45688***********42..344568888865516666555.5677778*************************876.5554444 PP
4B344.82.2e-145816691099
                   HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
            B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                    ++++ l++p +fa++h ++++++  l l+  + ++W  ++ y  k +++   + W +F ++n+L+eg ++vF+l++  s++++ v+vf k
  MLOC_74632.1 581 RSRRNSLTFPGNFAAKH-LVERSHDILLLRPNRRETWCARYYYHPKEQGFS-YSPWTKFLRDNKLCEGHVCVFELMKGvSKATMIVHVFTK 669
                   456799**********9.45555545566667889******9999998875.569*********************888*********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.63E-2137136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-2038132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.77141134IPR003340B3 DNA binding domain
CDDcd100171.04E-1842132No hitNo description
SMARTSM010199.1E-944134IPR003340B3 DNA binding domain
PfamPF023623.4E-1345131IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-20195292IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-20197293IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.914199292IPR003340B3 DNA binding domain
CDDcd100171.38E-17200290No hitNo description
SMARTSM010195.4E-9202292IPR003340B3 DNA binding domain
PfamPF023621.0E-13210290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-16401497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-17403498IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.659404500IPR003340B3 DNA binding domain
SMARTSM010190.0071407502IPR003340B3 DNA binding domain
PfamPF023621.1E-9413494IPR003340B3 DNA binding domain
CDDcd100172.25E-8413498No hitNo description
SuperFamilySSF1019361.49E-14564668IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-14566668IPR015300DNA-binding pseudobarrel domain
CDDcd100177.19E-10571667No hitNo description
PROSITE profilePS5086310.673572670IPR003340B3 DNA binding domain
SMARTSM010195.5E-4575669IPR003340B3 DNA binding domain
PfamPF023624.1E-13579669IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MPPDQDHEQG NRSGHNIRSK SFQRCEGCDS HYYWCHMDDT QKYFFKCMVG NFQEKMAIPQ  60
KFVQNFKGQI SEAIKLEAPD GNIYNVEAIK DLNKIVLGSG WGVFVRFYKL KAGYFLVFRY  120
IGDSHFKVLI FDFGSCCEKE VFHVLMNCGP NAQEKDSRLD RSLLSERQCQ NAGSSNGESH  180
RRCEHCDVHF YWHHMDDRQK HFLRLMVSDF RHEMNIPEKF VNNFRSRISK VMKLEAPDGN  240
IYNIQVTNDL NKIVLRSGWT AFASAYELKE HDLLVFRYIG DSHFKVLIFD PSGREKQLFH  300
IVMNHAPNVP DTGICHDPSF FRETRRRDCE SRDNNTRKTK KMTPLDSPSR RSAEGVTSPE  360
DTMNSGIPPE TTEPRYVLAT GCNLTTAQKA QIDALVKKVR PVIPFYITAI NKTSMSGTLV  420
ICKDYASKYL PHEDQFITLC HPRKSNIWLD HLKVTTDGSC MLSAGWSYFV LHNKLRESDV  480
CVFEVSKSVG EMIMVVHSLE GDHHLQEKEP ESQNKCNYPV KGKANKEEES DKKHPKSKSN  540
YYYSRYAEGL TGEEQEVIFR SVLIQQGNVV YVTVLGKNNV RSRRNSLTFP GNFAAKHLVE  600
RSHDILLLRP NRRETWCARY YYHPKEQGFS YSPWTKFLRD NKLCEGHVCV FELMKGVSKA  660
TMIVHVFTKV DGRFVLLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74632.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571060.0AK357106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1046E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168823.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A287QHN80.0A0A287QHN8_HORVV; Uncharacterized protein
TrEMBLA0A287QHT30.0A0A287QHT3_HORVV; Uncharacterized protein
STRINGMLOC_74632.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-19B3 family protein