PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74620.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Dof
Protein Properties Length: 339aa    MW: 34831.6 Da    PI: 8.8794
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74620.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.65.5e-38106163562
        zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                   +l+cprCds+ntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s
  MLOC_74620.2 106 TLRCPRCDSANTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 163
                   679***************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3289161IPR003851Zinc finger, Dof-type
PfamPF027011.5E-31107161IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.273107161IPR003851Zinc finger, Dof-type
PROSITE patternPS013610109145IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MYPAASNSIV QMQQQQPLQC FMGGGGGSEH QHHQLIPPSS GQLAPLPDVP GNTAASAPAV  60
AGSASASLQL VVSGQQGNPG EQPPRPSVSM TERARMARVP LPEPGTLRCP RCDSANTKFC  120
YFNNYSLSQP RHFCKACRRY WTRGGALRNV PVGGGCRRNT KRSSKKSSRQ GQGQGGGGAV  180
TAATSSSSTT STSTTTSAAA ATAADVIASM QALPHHLGGL PAAAALEASL EGYHSHSHHQ  240
HHNLPFLPPQ FLQQGLHGYH FADGDIGSQL ADGFPRGVAS GLLAQLASIK MEEHGAGAGG  300
AGGGFVGAHE QYWPGSGGGG GWPTEFLSGF SSSSSGNVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74620.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3717790.0AK371779.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2141F19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170526.11e-160dof zinc finger protein DOF5.1-like
TrEMBLM0YYW90.0M0YYW9_HORVV; Uncharacterized protein
STRINGMLOC_74620.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-38OBF-binding protein 3