PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_74620.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 345aa MW: 35663.6 Da PI: 8.6945

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_74620.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.6	5.7e-38	112	169	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCds+ntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s MLOC_74620.1 112 TLRCPRCDSANTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 169 679***************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	95	167	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.273	113	167	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	113	167	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	115	151	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MVFSSFPIFL DPPSWNQMQQ QQPLQCFMGG GGGSEHQHHQ LIPPSSGQLA PLPDVPGNTA 60 ASAPAVAGSA SASLQLVVSG QQGNPGEQPP RPSVSMTERA RMARVPLPEP GTLRCPRCDS 120 ANTKFCYFNN YSLSQPRHFC KACRRYWTRG GALRNVPVGG GCRRNTKRSS KKSSRQGQGQ 180 GGGGAVTAAT SSSSTTSTST TTSAAAATAA DVIASMQALP HHLGGLPAAA ALEASLEGYH 240 SHSHHQHHNL PFLPPQFLQQ GLHGYHFADG DIGSQLADGF PRGVASGLLA QLASIKMEEH 300 GAGAGGAGGG FVGAHEQYWP GSGGGGGWPT EFLSGFSSSS SGNVM

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MVFSSFPIFL DPPSWNQMQQ QQPLQCFMGG GGGSEHQHHQ LIPPSSGQLA PLPDVPGNTA  60
ASAPAVAGSA SASLQLVVSG QQGNPGEQPP RPSVSMTERA RMARVPLPEP GTLRCPRCDS  120
ANTKFCYFNN YSLSQPRHFC KACRRYWTRG GALRNVPVGG GCRRNTKRSS KKSSRQGQGQ  180
GGGGAVTAAT SSSSTTSTST TTSAAAATAA DVIASMQALP HHLGGLPAAA ALEASLEGYH  240
SHSHHQHHNL PFLPPQFLQQ GLHGYHFADG DIGSQLADGF PRGVASGLLA QLASIKMEEH  300
GAGAGGAGGG FVGAHEQYWP GSGGGGGWPT EFLSGFSSSS SGNVM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_74620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371779	0.0	AK371779.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2141F19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020170526.1	1e-171	dof zinc finger protein DOF5.1-like
TrEMBL	F2E6K5	0.0	F2E6K5_HORVV; Predicted protein
STRING	MLOC_74620.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	3e-38	Dof family protein