PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74600.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 936aa    MW: 105885 Da    PI: 8.3913
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74600.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1661e-20193275290
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   +Y +YA +vGFsvrk    k+ ++g   +r +vCs+eg+r+++  k     r+ + trtgC a++ ++++ +gk++vt+++++HnH+la
  MLOC_74600.2 193 YYVSYAGNVGFSVRKGLWDKTAKSG-SRSRFYVCSREGFRAKNLPK-----RPCPDTRTGCPARFSITLTPSGKYRVTEFVQDHNHQLA 275
                   8********************8888.8999***********98877.....9***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-17193275IPR004330FAR1 DNA binding domain
PfamPF105511.5E-27372465IPR018289MULE transposase domain
PROSITE profilePS5096610.014639686IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-4661688IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MASTSDGGAA GAGDPAASSP APIQPQHPTP RISHIVRTYL DLSSNSKKRR AARKNQLKPG  60
GVETSAAREN KGCGPSGAAS LEHSRLLREL GVRVSRYTHE ERRDIITRYM QKRSGRQGVN  120
RAAAKVPSRQ ALAERRRRGA GGQFLGKEDP QTTDKSEEKA EEEPELPAEV VANAGGVPII  180
GMVFESEEKA CMYYVSYAGN VGFSVRKGLW DKTAKSGSRS RFYVCSREGF RAKNLPKRPC  240
PDTRTGCPAR FSITLTPSGK YRVTEFVQDH NHQLAGPIDI GMLKSQRLLS KVQSGNGNAI  300
SIPPRYKNYL RTKSTNDMNA EDFRALTDYF RSMKSDNPSF YYAIQLDEND KAANVFWADA  360
RSIFDYHYFS DVICFDMTYK LNYYSRPLAL FLGMNHHRQM VIFGAAFLYD ETAESFKWLL  420
ETFKSAMCGK QPKTILTDRS ATLKEALDLA WPGTVHRYCL WQIYQDAVKS LAHVFCISEE  480
FTHDFSHCIF DIEDGQEFVD TWNVIMEKYN LKENKLLKEL YEDREIWALP YGRQIFSGDI  540
KSMVRAEAIS IRMKEYLGCE KELSPFLKFF ESSVEERRQE EIQADYQATQ GEARTPLPLL  600
WQAANLYTPI NFELFRKEHE ECMNCMVYGC GEFGSLSEYM ITVKNRTKEQ VVRFDSSDGT  660
VACTCKKFET AGILCCHILK VYELKNVKEI PPQYFLKRLS TDAKLGSVHE IDGFNFDSDI  720
GSCVPDRYAA LCRLFYKIAS KAAGNVETFS MVASQSDQLN EGIERTLQSM LAAKSSVVHS  780
IKDQLTRMVQ NDYPLGNSSD AQKATGKKTS EVTRRGNCQE TNKRQKPRKG VCSLYVYRCE  840
LFLYTCTCKF KHLFLHTLKI GHPDEVAAGP REREVNVTDQ FLPDQLMQGH YVLGHNFGLS  900
TSQNLRDNLN HFVQASAVPT LQQQPFPGNG QLTETQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485280.0AK248528.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51g04, mRNA sequence.
GenBankAK3544720.0AK354472.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007L07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167791.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020167792.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM0YYV40.0M0YYV4_HORVV; Uncharacterized protein
STRINGMLOC_74600.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-101FAR1-related sequence 5