PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_74394.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bHLH

Protein Properties

Length: 185aa MW: 18960.5 Da PI: 10.9254

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_74394.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.8	1.4e-06	35	84	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 rr+ + rEr RR+ + f+eL llP + + a+++ A+ Y++ L MLOC_74394.2 35 RRTSPGRERARRQTMSALFAELGALLPVgL----PHRACRADVVDGAIAYVRAL 84 888999**********************66....46788899999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.611	33	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.89E-6	35	86	No hit	No description
SuperFamily	SSF47459	6.02E-9	35	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-6	37	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0049	39	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd02116	0.00436	130	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSDDAHGLAL ALGPGAESSP RSTTVEVTRA GAAGRRTSPG RERARRQTMS ALFAELGALL 60 PVGLPHRACR ADVVDGAIAY VRALEDTAAE LEAHRAMSAG RGRARGGGGS TEVVASGETS 120 CFAVRLRAAR PGALTRVLQV FQRHRVPVLA ATVARNGGEA AVTVTTAMVD PALAGKIEAD 180 IISNA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_74394.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187346.1	2e-71	uncharacterized protein LOC109773057
TrEMBL	A0A3B5YSQ8	1e-72	A0A3B5YSQ8_WHEAT; Uncharacterized protein
STRING	MLOC_74394.1	1e-106	(Hordeum vulgare)