PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_74313.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 147aa MW: 16752 Da PI: 8.114 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 51.7 | 2.9e-16 | 3 | 108 | 18 | 90 |
FAR1 18 kskkskrngeitkrtfvCskegkreeekkk..................................tekerrtraetrtgCkaklkvkkekdgkwevtk 80 +s+k ++ge +k++fvC+k k++ ++ t+k++++ ++ +tgCkak++vk+ dg+wev++ MLOC_74313.1 3 TSRKAAKTGELIKQQFVCNKFRKPKVDDGGaenismldeivdetknddqdedivfldddsktkkTTKKQKRDTVLQTGCKAKMVVKLI-DGRWEVIH 98 57788999************999999888899*****************************99888888888999*************.******** PP FAR1 81 leleHnHela 90 ++ eHnH+l+ MLOC_74313.1 99 FVGEHNHPLV 108 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-14 | 3 | 108 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MNTSRKAAKT GELIKQQFVC NKFRKPKVDD GGAENISMLD EIVDETKNDD QDEDIVFLDD 60 DSKTKKTTKK QKRDTVLQTG CKAKMVVKLI DGRWEVIHFV GEHNHPLVDK PSLTKYLRSH 120 QGIPAEERAF LTHLHNCNLT TGLNQHP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_74313.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168640.1 | 1e-51 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020194049.1 | 3e-53 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | M0YY55 | 1e-105 | M0YY55_HORVV; Uncharacterized protein | ||||
STRING | MLOC_74313.1 | 1e-106 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 1e-06 | FAR1-related sequence 4 |