PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74270.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 432aa    MW: 48545.4 Da    PI: 5.3402
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74270.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.62e-33131032101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye++++++++ ++ w+ +g+sfvv+ + +f +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF++++F +++++ l++i+
  MLOC_74270.1  13 FLIKTYEMVDEPATDAVVAWTPSGTSFVVFSQADFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEEFIRDQRHRLKNIH 100
                   9***************************************************************9998.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
  MLOC_74270.1 101 RRK 103
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.12E-338102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-599102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.3E-3610102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-201336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-205163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEGSGGSSSL PPFLIKTYEM VDEPATDAVV AWTPSGTSFV VFSQADFCRD LLPKYFKHNN  60
FSSFVRQLNT YGFRKVDPEQ WEFANEEFIR DQRHRLKNIH RRKPIFSHSS HTQGAGPLAD  120
SERRDYEEEI ERLKCENASL NLQLERKKTD MDSKMKALED KLLAIEDQQR NLISYVTEIV  180
KAPGFLSSFI EQSDHHGKKR RLPKSISFHE GASTQGNQIM HCDLANSPAH KLYRESFDKM  240
ESSLNSLENF FKEATEALGN DISYDGDVPR HSSAVVLTEL HSSGESDPHA QSPPSMMHTC  300
SAGVGDSHSS RDIAESASCP ESPPLPEAHS RADSRAKVSD IDVNLEPAVT ETGPSRDQQP  360
TQDPPADAND GFWQQFLTEQ PGSSDTHQEA QSERRDREAN QTVTRDRGSF WWGKSVEQMT  420
EKLGHLTSAE KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-29310219129Heat shock factor protein 1
5d5v_B9e-29310219129Heat shock factor protein 1
5d5v_D9e-29310219129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3711210.0AK371121.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2125M08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165982.10.0heat stress transcription factor A-4b
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLF2E4P70.0F2E4P7_HORVV; Predicted protein
STRINGMLOC_74270.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.14e-76HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]