PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_7426.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 137aa MW: 14525.5 Da PI: 7.9613 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.1 | 1.2e-14 | 11 | 53 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g+W++eEde l ++v+++G ++W++I r ++ gR+++ +s++q MLOC_7426.2 11 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGNA-RSHFQ 53 79******************************.****65.77777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.191 | 6 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.33E-11 | 7 | 47 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-9 | 10 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 11 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-13 | 11 | 47 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.92E-13 | 13 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:2000022 | Biological Process | regulation of jasmonic acid mediated signaling pathway | ||||
GO:2000031 | Biological Process | regulation of salicylic acid mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MGAESECDRI KGPWSPEEDE ALRRLVERHG ARNWTAIGRG IPGRSGNARS HFQELSPSPR 60 SPSPPPAPQP SSSSYPFSGH LVAAMQEMIR AEVCKYMSGV GLPAGCGAGA VGEACIPQLV 120 EGVMRAAAER VGVMTRQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00653 | PBM | Transfer from LOC_Os02g09480 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_7426.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376836 | 1e-149 | AK376836.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3137I17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015693651.1 | 6e-44 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A446W9K2 | 1e-74 | A0A446W9K2_TRITD; Uncharacterized protein | ||||
STRING | OB06G29870.1 | 2e-37 | (Oryza brachyantha) | ||||
STRING | Traes_6AS_93815D497.1 | 2e-35 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-16 | myb domain protein r1 |