PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74022.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 298aa    MW: 32647.1 Da    PI: 4.5297
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74022.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-112222621055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+RR+riN+++ +L+ l+P+      +K++ +++Le+AveY+k +q
  MLOC_74022.2 222 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVEYVKFMQ 262
                   9******************97.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14213277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-13217272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-12218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-12221266No hitNo description
PfamPF000101.0E-8222262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MESSYSSAMP METDMMSQFL EDSHHCFAYE QQDESMEAMA AMFLPALDTD SNSSSSCLNY  60
DVSPQCWPQP QPGHSSSVTS FLDPAHGYES FEFPVVDPFP HAEFQSHCTD IPYLGGEDLS  120
PLDGNCVPAG GEEAANDHTP VTNKRKSRAA TTASKKAKKA GKKDFTGNDI EGDDTYAIDP  180
QSSSSCTSED GDLDGNAKSS SKKAGTRASR GAATDPQSLY ARKRRERINE RLKTLQNLVP  240
NGTKVDISTM LEEAVEYVKF MQLQIKLLSS DDMWMYAPLA YNGMNVSSLE MHIAALQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74022.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153858.10.0transcription factor bHLH69-like
SwissprotQ84WK06e-49BH085_ARATH; Transcription factor bHLH85
TrEMBLM0YXA00.0M0YXA0_HORVV; Uncharacterized protein
STRINGMLOC_74022.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-50root hair defective 6-like 4
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]