PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73522.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 263aa    MW: 27933.3 Da    PI: 4.4044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73522.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-184292155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g
  MLOC_73522.1 42 TRYLGVRRRP-WGRYAAEIRDPAT---KDRHWLGTFDTAEEAAVAYDRAARSLRG 92
                  5799******.**********843...4*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.51E-3042101No hitNo description
PROSITE profilePS5103221.53543100IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2143100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-2843100IPR001471AP2/ERF domain
SMARTSM003803.7E-3343106IPR001471AP2/ERF domain
PfamPF008479.2E-114392IPR001471AP2/ERF domain
PRINTSPR003671.9E-84455IPR001471AP2/ERF domain
PRINTSPR003671.9E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MNFSSYFFSS SSSSSSSSDK KSSSSKRRQQ AAQQQQPDSN PTRYLGVRRR PWGRYAAEIR  60
DPATKDRHWL GTFDTAEEAA VAYDRAARSL RGVRARTNFA YPDLPPGSSI TPYLSPDLTS  120
NDNSVQLLQP FYADPVAPLP THQPAAGGGG QNVGSEYLYG GAPDMSSLMD DISMPDDLPM  180
IDGGEDMDFS MYGVGGNGAN AAGGGGWCDA SELGAYSSTP GGGHGVYFEE GYVHSPLFSP  240
MPAVDDAGAD GFQLGGSSSS YYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-184499359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73522.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188896.11e-145ethylene-responsive transcription factor LEP-like
TrEMBLM0YVQ00.0M0YVQ0_HORVV; Uncharacterized protein
STRINGMLOC_73522.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-31ERF family protein