PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73356.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 388aa    MW: 41422.5 Da    PI: 8.1625
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73356.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75e-35261192103
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll++i
  MLOC_73356.1  26 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKQLLCEI 113
                   9********************6667*****************************************999.........******************* PP

                   XXXXXX CS
  HSF_DNA-bind  98 krkkse 103
                   +r+k++
  MLOC_73356.1 114 HRRKTS 119
                   ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3615111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5822116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.17E-3123116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3026116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MERCGSWSES DAAAQAAAQK AVPAPFLTKT YQLVDDPATD HIVSWGDDRV STFVVWRPPE  60
FARDILPNYF KHNNFSSFVR QLNTYGFRKV VPERWEFANE FFRKGEKQLL CEIHRRKTSG  120
STTSSSPPPF FAPPHFPLFH PGVSVAHHHQ QFVGEDGAMA AHAGMGVPFM QPHWREQGAP  180
RLLALGGPAA PSPGVEGNGR ATSAAVLMDE NERLRRSNTA LLQELSHMRK LYNDIIYFVQ  240
NHVRPVAPSP AAATFLQGLG NGMQPRKMPP ATTGAGNGLN TSGGSTTSSS SLTIADELSP  300
PPNHLSAEKS GGEAGSSSAA LSAPTKLFGV HLSAAPVGAG SKRPPSPEEE LPSTPPATKA  360
RLVLESDDLS LSVAPPAQPC AASSPARS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-221611820131Heat shock factor protein 1
5d5v_B5e-221611820131Heat shock factor protein 1
5d5v_D5e-221611820131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560020.0AK356002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180015.10.0heat stress transcription factor B-4c-like
SwissprotQ67U941e-159HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLF2CWJ90.0F2CWJ9_HORVV; Predicted protein
STRINGMLOC_73356.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-77heat shock transcription factor B4