PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73122.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 140aa    MW: 16169.7 Da    PI: 9.5232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73122.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-153882347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
     MLOC_73122.4 38 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 82
                     8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.1E-113585IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-173687IPR009057Homeodomain-like
PROSITE profilePS5129415.4363787IPR017930Myb domain
TIGRFAMsTIGR015572.2E-183786IPR006447Myb domain, plants
CDDcd001672.19E-113883No hitNo description
Gene3DG3DSA:1.10.10.609.5E-133881IPR009057Homeodomain-like
PfamPF002494.3E-133882IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MQREIYMRIF FFHLQLFDAY IICCHSVNSI YCNYAAVPWT EEEHRTFLAG LEKLGKGDWR  60
GIAKNFVTTR TPTQVASHAQ KYFLRQTNPN KKKRRSSLFD MMASDLSPAP NCPILPPTMA  120
KFHDMVTMTN QLQNSSLVSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19094KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73122.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666491e-172AK366649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045F05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193360.13e-70uncharacterized protein LOC109779160 isoform X1
RefseqXP_020193361.13e-71transcription factor SRM1-like isoform X2
SwissprotB8BI931e-36MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC511e-36MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLM0YUH71e-100M0YUH7_HORVV; Uncharacterized protein
STRINGMLOC_73122.21e-101(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-36MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]