PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73122.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 278aa    MW: 30584 Da    PI: 9.0447
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73122.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.2e-153882347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
     MLOC_73122.2 38 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 82
                     8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.1E-113585IPR001005SANT/Myb domain
PROSITE profilePS5129415.4363787IPR017930Myb domain
SuperFamilySSF466891.08E-163787IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-183786IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.2E-123881IPR009057Homeodomain-like
CDDcd001671.57E-103883No hitNo description
PfamPF002491.5E-123882IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MQREIYMRIF FFHLQLFDAY IICCHSVNSI YCNYAAVPWT EEEHRTFLAG LEKLGKGDWR  60
GIAKNFVTTR TPTQVASHAQ KYFLRQTNPN KKKRRSSLFD MMASDLSPAP NCPILPPTMA  120
KFHDMVTMTN QLQNSSLEGV SSSNPANLAK QVTRDLPPPV PSFTATNVDT SLTKMNHMDC  180
FSRRPSLFRP VPIVPEGTPP SAPATANTSA LTFEANLTSC TSAFLIPQSG PSPLPPATAK  240
TAHPAENKDL ELTVGLPSQQ NMTNSISSRN GVGVIQVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19094KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73122.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574350.0AK357435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1053H08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193360.11e-161uncharacterized protein LOC109779160 isoform X1
TrEMBLM0YUH70.0M0YUH7_HORVV; Uncharacterized protein
STRINGMLOC_73122.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-34MYB_related family protein