PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_73110.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Trihelix | ||||||||
Protein Properties | Length: 406aa MW: 44045.2 Da PI: 9.5703 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.7 | 5.6e-17 | 65 | 148 | 2 | 72 |
trihelix 2 WtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e+l Li+a+r +++r g +++++W++v ++++ g+ rs++qC++kw+nl ++ykk+++ e +r+ MLOC_73110.4 65 WTLHETLILITAKRLDDDRRAGGGvamagpsspptprSAEQRWKWVENYCWINGCLRSQNQCNDKWDNLLRDYKKVRDYEARRA 148 **************87777776534455566666666******************************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.748 | 57 | 134 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-5 | 58 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.5E-10 | 64 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MSASSDPSPS SSAAAAVPSP LAAYQTHPHH HHNLHLSTPP HHAYPPAAPP PSPASAPRDY 60 RKGNWTLHET LILITAKRLD DDRRAGGGVA MAGPSSPPTP RSAEQRWKWV ENYCWINGCL 120 RSQNQCNDKW DNLLRDYKKV RDYEARRASI AAAAPPVDAA APAAQQQQPQ TPLPSYWTME 180 RHDRKERNLP TNLAPEVYDA LLDVLSRRAA RRGGAAIAPG APAQLALPPP PPPPPPSPPK 240 PLLNQQQQQQ QQKHHHLHPQ PPALLQLPPP LPHPSSVPSA TSVSAEEEMT GSSESGSDGL 300 GGMSGGGGGD GDEPEAKRRR RVERLGSSVV RSATVLARTL VACEDRRERR HREVLELEER 360 RLRLEAERNE VRRQGFAGLV AAVNGLSGAI HALVSDHHGR SGDSSR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 316 | 321 | KRRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_73110.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376279 | 0.0 | AK376279.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3119M05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153683.1 | 1e-118 | trihelix transcription factor ASR3-like | ||||
TrEMBL | F2EJF2 | 0.0 | F2EJF2_HORVV; Predicted protein | ||||
STRING | MLOC_73110.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31310.1 | 6e-43 | Trihelix family protein |