PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_73037.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 236aa MW: 25712.5 Da PI: 5.8075 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.8 | 5.2e-08 | 33 | 59 | 21 | 48 |
TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48 +++W++Ia++++ gRt++++k+ w+++l MLOC_73037.2 33 TDRWSAIAARLP-GRTDNEIKNVWHTHL 59 457*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.06E-8 | 31 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-6 | 32 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-12 | 32 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.82E-5 | 33 | 59 | No hit | No description |
PROSITE profile | PS50090 | 6.388 | 35 | 59 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
PHPLPLVVFL LHHIFTVPQK WWQSLLLCFN CKTDRWSAIA ARLPGRTDNE IKNVWHTHLK 60 KRLDPSAQEQ HEEAGVAKKR KKPAAAAAPR KRDGKVKMRN LNALTARAAA AAPVSSPERS 120 VSSTVTESTS TASAAAEQHG NSGSSSASAS ASVKEECFTS SEESEEFQID ESFWSETLSM 180 PLDDLNDVCM EPHDAFGKPD GDMDYWLRLF MEGGGGSGSG SDDNNNHDGA LDLPQI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 81 | KKRLDPSAQEQHEEAGVAKKRKK |
2 | 77 | 81 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_73037.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353929 | 0.0 | AK353929.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1003N07. | |||
GenBank | AK359880 | 0.0 | AK359880.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1105F18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164748.1 | 2e-74 | myb-related protein Myb4-like | ||||
Swissprot | Q7XBH4 | 1e-43 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | Q96463 | 1e-86 | Q96463_HORVU; Myb4 transcription factor (Fragment) | ||||
STRING | MLOC_73037.2 | 1e-175 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.2 | 2e-14 | myb domain protein 15 |
Publications ? help Back to Top | |||
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