PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72809.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-YC
Protein Properties Length: 282aa    MW: 31441 Da    PI: 5.3093
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72809.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC59.47.6e-196851897
         NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
                  ++++P  rikki++adedv +i+  +Pvl+ska elf+ +l  r+++ + e+  +t+  s +++++ + d++dfl ++  
  MLOC_72809.2  6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYNITIEKGVKTVSSSHLKQCIHSYDVYDFLKNVAS 85
                  5789***********************************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.5E-25372IPR009072Histone-fold
SuperFamilySSF471132.29E-20488IPR009072Histone-fold
PfamPF008084.0E-17871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YNITIEKGVK  60
TVSSSHLKQC IHSYDVYDFL KNVASKVPDL GAPDSNADDK LGKRRKHGED ESEEETKRTR  120
NEAACHTSNG RGRGRGRGRG RRAGRGAERE IEHHELARTE FSNPGHLKVE TGDGFDTTET  180
KEHTPLSNAR ASLRNIDLNL DLADYEEDTV APQADPAAPV VIVASQVQTS GPSVSLLKEV  240
ETKDLLGWQL PEMNKMALDP VQFALSSNHR LEEEDEDYDN EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-22271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130139RGRGRGRGRG
2130140RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72809.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2505930.0AK250593.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf92h11, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194314.11e-159dr1-associated corepressor homolog isoform X1
TrEMBLA0A287G2B30.0A0A287G2B3_HORVV; Uncharacterized protein
STRINGMLOC_72809.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.13e-51nuclear factor Y, subunit C11