PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_72737.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 24441.8 Da PI: 9.4137 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.5 | 3e-54 | 17 | 146 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 lppGfrFhPtdee+++ yL++kv + +e+ ++i evd++k ePw+Lpkk+k +++ewyf++++d+ky+tg r+nratk gyWkatgkdke+++ MLOC_72737.1 17 LPPGFRFHPTDEEIITSYLAPKVLNPAFEA-TAIGEVDMNKNEPWELPKKAKMGQNEWYFYCQKDRKYPTGIRTNRATKVGYWKATGKDKEIFNPhc 112 79**************************99.88***************99999*****************************************987 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ l+g+kktLvfykgrap+gekt+Wvmheyrle MLOC_72737.1 113 TSMLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLE 146 8888****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-59 | 9 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.776 | 17 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-28 | 18 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAGHLQVQQQ QQQQLELPPG FRFHPTDEEI ITSYLAPKVL NPAFEATAIG EVDMNKNEPW 60 ELPKKAKMGQ NEWYFYCQKD RKYPTGIRTN RATKVGYWKA TGKDKEIFNP HCTSMLIGMK 120 KTLVFYKGRA PSGEKTNWVM HEYRLEISKQ STSGLPTSIA NAAAINMSSK EYVVCRIFQK 180 NTGSGPSSMV SYEDVGTGPS NNDQSNRGAT DGMLKYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-50 | 4 | 184 | 3 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-50 | 4 | 184 | 3 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-50 | 4 | 184 | 3 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-50 | 4 | 184 | 3 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-50 | 4 | 184 | 3 | 169 | NAC domain-containing protein 19 |
4dul_B | 7e-50 | 4 | 184 | 3 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_72737.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR819764 | 0.0 | FR819764.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC019 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191194.1 | 1e-131 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 2e-78 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | F6IAY3 | 1e-163 | F6IAY3_HORVV; NAC transcription factor | ||||
STRING | MLOC_72737.1 | 1e-164 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39610.1 | 2e-77 | NAC domain containing protein 6 |
Publications ? help Back to Top | |||
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