PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_72641.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NF-YC

Protein Properties

Length: 227aa MW: 24507.1 Da PI: 4.5069

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_72641.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	24	8.2e-08	194	225	12	43
NF-YC 12 katdfknhelPlarikkilkadedvkmisaea 43 +++ +++lPl r+k+i+++d +vk+++aea MLOC_72641.2 194 AEAQPLQTALPLGRVKRIMRVDSEVKKVTAEA 225 444555899**********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.5E-7	198	225	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MGLKESHWPM GFCMTKKRAN KCWAFAATPA RPLHQPNEVS SGAARPLRRR RKSPSRGKIS 60 QAPRHFAPLP KSKHHPHQDL PNPSPLAMAT VAAAAPEHIE AMEQVEGEER AAGDAAAATD 120 DVDVPTEAMK QVDGDEAAAT AAADDDADEA MEEAAEIDAE EEADASAEAH MEASEQVDEE 180 EREEVHAVAE EEEAEAQPLQ TALPLGRVKR IMRVDSEVKK VTAEASL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_72641.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373759	1e-172	AK373759.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3043A13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153874.1	9e-32	nuclear transcription factor Y subunit C-6
TrEMBL	A0A287KD85	1e-159	A0A287KD85_HORVV; Uncharacterized protein
STRING	MLOC_72641.1	1e-73	(Hordeum vulgare)