PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_72623.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 213aa MW: 22790.3 Da PI: 9.14 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 183 | 206 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++ Fs+ L H ++ H MLOC_72623.3 183 HVCNSCNRAFSSLKGLDDHSKMkH 206 79*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.203 | 183 | 206 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 185 | 206 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MAIPLDFNTD ANKNNEIAHD ANKLIAPRPA DAPSSIPEAT VEETNTPGKQ KADDKGKANA 60 QNPIDGADNE SSDQDVDYLR KKTKDDYNPM ETPLNTPQGK RAKIATPTTG NKTGYVHVAT 120 PHPAAKQACK SVDHVHVVTP HPAVKQARKS GDHVHVATPH PAAKHARKTP ENSDDKSKQS 180 AGHVCNSCNR AFSSLKGLDD HSKMKHGVAS KVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_72623.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU348776 | 0.0 | EU348776.1 Hordeum vulgare cultivar Caresse histone deacetylase HD2 isoform 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163793.1 | 1e-92 | histone deacetylase HDT3-like | ||||
TrEMBL | C1IC98 | 1e-137 | C1IC98_HORVU; Histone deacetylase HD2 isoform 2 | ||||
TrEMBL | M0YT58 | 1e-139 | M0YT58_HORVV; Uncharacterized protein | ||||
STRING | MLOC_72623.2 | 1e-138 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 7e-08 | histone deacetylase 2C |