PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_72623.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 386aa MW: 41907.7 Da PI: 8.5088 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00077 | 356 | 379 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++ Fs+ L H ++ H MLOC_72623.2 356 HVCNSCNRAFSSLKGLDDHSKMkH 379 79*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.203 | 356 | 379 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 358 | 379 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MTENHRFWGV VVKPGETVKC DPGDSHYHIS TIALEAGKAE ENVQVFVNTD DTRIMLGTLS 60 VHNHPHVLAD LVFKKEFELL HSSMTSNISF TGYKFDIMKR SHSCTKQGDE SDEEVPMAIP 120 LDFNTDANKN NEIAHDANKL IAPRPADAPS SIPEATVEET NTPGKQKADD KGKANAQNPI 180 DGADNESSDQ DVDYLRKKTK DDYNPMETPL NTPQGKRAKI ATPTTGNKTG YVHVATPHPA 240 AKQACKSVDH VHVVTPHPAV KQARKSGDRV HVVTPHPAAK QSHKSGDHVH VATPHPAAKQ 300 ARKSGDHFHV ATPHPAAKQA RKSGDHVHVA TPHPAAKHAR KTPENSDDKS KQSAGHVCNS 360 CNRAFSSLKG LDDHSKMKHG VASKVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_72623.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU348776 | 0.0 | EU348776.1 Hordeum vulgare cultivar Caresse histone deacetylase HD2 isoform 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163793.1 | 0.0 | histone deacetylase HDT3-like | ||||
TrEMBL | A0A287MA80 | 0.0 | A0A287MA80_HORVV; Uncharacterized protein | ||||
TrEMBL | C1IC98 | 0.0 | C1IC98_HORVU; Histone deacetylase HD2 isoform 2 | ||||
STRING | MLOC_72623.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11173 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 1e-14 | histone deacetylase 2C |