PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72581.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 295aa    MW: 31978.5 Da    PI: 7.4492
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72581.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.32.3e-3335165189
           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceaes 77 
                   aag+kdrhsk+ T++g+RdRR+Rls+++a++f+d+qd+LG+d++sk+ieWL+q+a +ai+ l+++                    +           
  MLOC_72581.1  35 AAGGKDRHSKVVTSRGLRDRRIRLSVQTAIQFYDIQDRLGVDQPSKAIEWLIQAAATAIDGLPSLdcsfglpvaspaaedtaevsT----------- 120
                   6899*************************************************************999988773333333222220........... PP

           TCP  78 ssssasnsssg......................................k 89 
                       ++  s+g                                      +
  MLOC_72581.1 121 ----SE-TSKGsvlslangpadsdnaahqanaysggtangtfaellhcsN 165
                   ....22.2222233333333333334444444555555556666654321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.3E-3437172IPR005333Transcription factor, TCP
PROSITE profilePS5136930.8193896IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEEADKDRNS CKRLRAVGGG DSADAWRTFR VARAAAGGKD RHSKVVTSRG LRDRRIRLSV  60
QTAIQFYDIQ DRLGVDQPSK AIEWLIQAAA TAIDGLPSLD CSFGLPVASP AAEDTAEVST  120
SETSKGSVLS LANGPADSDN AAHQANAYSG GTANGTFAEL LHCSNAADKP MQHQHHQQQP  180
TLAYYAAPGS HVAPMSFEMI PQLTFSQDQQ HRHHRHHASV AFERSTLQSN TVSTPQWPPS  240
QHPFLMQRFS AAPAEPSPMF PFFLGGNSAA AAAPAAANAP ERRLQLWDFK EERKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-224397155Putative transcription factor PCF6
5zkt_B6e-224397155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72581.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1012153e-77FP101215.1 Phyllostachys edulis cDNA clone: bphylf044o06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183767.10.0transcription factor PCF8-like
RefseqXP_020183769.10.0transcription factor PCF8-like
SwissprotA2ZMR93e-83PCF8_ORYSI; Transcription factor PCF8
TrEMBLM0YT050.0M0YT05_HORVV; Uncharacterized protein
STRINGMLOC_72581.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.23e-32TCP family protein