PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_72553.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 342aa MW: 37542 Da PI: 9.199

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_72553.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.6	6e-33	54	223	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee............vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 lp+G++F+Ptd+el+ e+L++kv++ + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ MLOC_72553.1 54 LPAGVKFDPTDQELI-EHLEAKVRSGGtsaV---AapshplidefipTIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTRKRRKiqpp 145 799**********.99**9995550...34555555665544776646******.556667799**************88* PP NAM 78 ..........................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v + +g++ g+kk+Lv+y g+++k+ekt+Wvmh+y+l MLOC_72553.1 146 atvdasalssagsaaagaghhqqqqqRSETRWHKTGKTRPVAV-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 223 *******************9998755789********.99********5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-36	48	142	IPR003441	NAC domain
PROSITE profile	PS51005	28.149	54	242	IPR003441	NAC domain
Pfam	PF02365	1.6E-15	55	223	IPR003441	NAC domain
SuperFamily	SSF101941	6.93E-36	173	242	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDDGATATAG GGTSGGGHHL IGSRIEEHRK YMSESSCCPR CGHKIDQKLD WVGLPAGVKF 60 DPTDQELIEH LEAKVRSGGT SAVAAPSHPL IDEFIPTIEG EDGICYTHPE KLPGVSKDGL 120 SRHFFHRPSK AYTTGTRKRR KIQPPATVDA SALSSAGSAA AGAGHHQQQQ QRSETRWHKT 180 GKTRPVAVGG RQRGCKKILV LYTNFGKHRK PEKTNWVMHQ YHLGESEEER EGELVVSKIF 240 YQTQPRQCGV GDGASVSVPA SSTGTSAMER RRVDRAGTSS ALRMTPSDMV NAAFHGTTRI 300 QDFSFAQFRN TIDEVSFDPS LQVIVDRFRL AARVQHVYLD ER

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDDGATATAG GGTSGGGHHL IGSRIEEHRK YMSESSCCPR CGHKIDQKLD WVGLPAGVKF  60
DPTDQELIEH LEAKVRSGGT SAVAAPSHPL IDEFIPTIEG EDGICYTHPE KLPGVSKDGL  120
SRHFFHRPSK AYTTGTRKRR KIQPPATVDA SALSSAGSAA AGAGHHQQQQ QRSETRWHKT  180
GKTRPVAVGG RQRGCKKILV LYTNFGKHRK PEKTNWVMHQ YHLGESEEER EGELVVSKIF  240
YQTQPRQCGV GDGASVSVPA SSTGTSAMER RRVDRAGTSS ALRMTPSDMV NAAFHGTTRI  300
QDFSFAQFRN TIDEVSFDPS LQVIVDRFRL AARVQHVYLD ER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_72553.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969775	3e-77	EU969775.1 Zea mays clone 335447 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164992.1	1e-176	uncharacterized protein LOC109750443
Swissprot	Q9M0F8	1e-110	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A446XME5	0.0	A0A446XME5_TRITD; Uncharacterized protein
STRING	MLOC_72553.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	2e-97	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]