PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72393.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 202aa    MW: 21428.3 Da    PI: 10.3681
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72393.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.97.3e-3451168289
           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec....eaesssssasnsssg..... 88 
                   ag+ +  +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++++a  +c    +++  s        g     
  MLOC_72393.1  51 AGAAKGAKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSIMAATGSGTTPAvFSCssapSTAGVSLL------Gkrpre 141
                   56667789********************************************************998885444322211111111......022222 PP

           TCP  89 ..........................k 89 
                                             +
  MLOC_72393.1 142 dheaapsfwealqarpvpwglspsleA 168
                   344455666666666666666544322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.9E-3056143IPR005333Transcription factor, TCP
PROSITE profilePS5136926.35957111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042752Biological Processregulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MASRDAATFQ LYRPMAMPTA TPMSQTMAMP VFSSAEAADD AVVAVPAPRK AGAAKGAKDR  60
HSKVNGRGRR VRMPIVCAAR VFQLTRELGL KSDGQTVEWL LRQAEPSIMA ATGSGTTPAV  120
FSCSSAPSTA GVSLLGKRPR EDHEAAPSFW EALQARPVPW GLSPSLEAQA YASSVAQGHH  180
HHLNLLSALS GASRRPAEEE SR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00499DAPTransfer from AT5G08330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72393.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3594080.0AK359408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096D21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178782.11e-115transcription factor TCP7-like
TrEMBLM0YSG51e-143M0YSG5_HORVV; Uncharacterized protein
STRINGMLOC_72393.11e-144(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.12e-36TCP family protein