PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72275.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 333aa    MW: 35442 Da    PI: 6.6435
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72275.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.7e-0858103244
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44 
                      g WT e d+ + +a ++   g     W++Ia+ ++ g+t++++k  +
     MLOC_72275.2  58 GVWTWEQDKAFENALALVDLGegeaVWNKIANVVP-GKTAEEVKRQY 103
                      78**************9888888************.********988 PP
2Myb_DNA-binding38.62.5e-12169212447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
     MLOC_72275.2 169 WTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 212
                      *****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.8455111IPR017884SANT domain
SMARTSM007172.2E-456109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-458104IPR009057Homeodomain-like
PfamPF002494.1E-658103IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-860113IPR009057Homeodomain-like
CDDcd001672.94E-760107No hitNo description
PROSITE profilePS5129416.185161217IPR017930Myb domain
SuperFamilySSF466891.65E-16163218IPR009057Homeodomain-like
SMARTSM007173.0E-10165215IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.0E-17165215IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.8E-10168211IPR009057Homeodomain-like
CDDcd001675.10E-10169213No hitNo description
PfamPF002498.2E-11169212IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSAMVTEGFG SGGWMWEQDV VFENAPVLVD LQEGDAVWNN IADNIEGKKG LGSGSGPGVW  60
TWEQDKAFEN ALALVDLGEG EAVWNKIANV VPGKTAEEVK RQYELLVMDV DAIEAGRVPL  120
PVYTDGGSPE EGGSSGKKIG GRVGGGWGGH VQKGSPKFVE QERRKGILWT EDEHRLFLLG  180
LEKYGKGDWR SISRNFVISR TPTQVASHAQ KYFIRLNSMN RERRRSSIHD ITSVNGEASA  240
AQGPITGTNG QAAVPGKSPK QSPHQPGSLP PGVDAFGTTI GQPVGGPLVS AVGTPVTLPV  300
AAPPHMGYAM HAPVPGTVVP RAPMYPMPPP QSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145GGRVGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72275.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669320.0AK366932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2048J09.
GenBankAK3726190.0AK372619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3007D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192024.11e-140transcription factor SRM1-like
SwissprotQ9FNN67e-87SRM1_ARATH; Transcription factor SRM1
TrEMBLM0YS710.0M0YS71_HORVV; Uncharacterized protein
STRINGMLOC_72275.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-83MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]