PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_72275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 251aa MW: 26269.4 Da PI: 9.582 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.2 | 8e-13 | 86 | 130 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky MLOC_72275.1 86 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 130 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.952 | 1 | 29 | IPR017884 | SANT domain |
CDD | cd00167 | 0.0031 | 2 | 25 | No hit | No description |
PROSITE profile | PS51294 | 16.605 | 79 | 135 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-16 | 81 | 136 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-17 | 83 | 133 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.3E-11 | 83 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-11 | 86 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.70E-10 | 86 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-11 | 86 | 129 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MWDKIADAVE GKSPEEVRRH YELLVEDVDG IEAGRVPLLV YAGDGEEGGS GGGGGGGKKS 60 SGGGGGSHGE KGSSKSAEQE RRKGIAWTED EHRLFLLGLE KYGKGDWRSI SRNFVISRTP 120 TQVASHAQKY FIRLNSMNRE RRRSSIHDIT SVNGEASAAQ GPITGTNGQA AVPGKSPKQS 180 PHQPGSLPPG VDAFGTTIGQ PVGGPLVSAV GTPVTLPVAA PPHMGYAMHA PVPGTVVPRA 240 PMYPMPPPQS R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 63 | GGKKSSGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_72275.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366932 | 0.0 | AK366932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2048J09. | |||
GenBank | AK372619 | 0.0 | AK372619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3007D08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192024.1 | 1e-141 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 2e-85 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | F2DSR4 | 1e-179 | F2DSR4_HORVV; Predicted protein (Fragment) | ||||
STRING | MLOC_72275.2 | 1e-144 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-79 | MYB family protein |
Publications ? help Back to Top | |||
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