PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_72262.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 26864.4 Da PI: 5.381 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.8 | 2.2e-12 | 4 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd+l + + ++G g +W + a+t+g+ R++ +c+ rw++yl MLOC_72262.2 4 KGKWSREEDDLMRRHIVKYGVGrSWQALAETLGLQRCGRSCRARWLNYL 52 79******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 32 | 2.9e-10 | 59 | 100 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g++T+ E+ ++ + + G+ W+ Ia+ ++ gRt+ +k++w+ MLOC_72262.2 59 GNFTPAEESIICEMYSKRGSC-WSVIAAQLP-GRTDLAVKNYWN 100 89*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.898 | 1 | 56 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-8 | 3 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.52E-24 | 3 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-10 | 4 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-20 | 5 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.77E-8 | 6 | 52 | No hit | No description |
PROSITE profile | PS51294 | 14.317 | 57 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-8 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-9 | 59 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-19 | 60 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.74E-7 | 60 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MVKKGKWSRE EDDLMRRHIV KYGVGRSWQA LAETLGLQRC GRSCRARWLN YLRPGLKHGN 60 FTPAEESIIC EMYSKRGSCW SVIAAQLPGR TDLAVKNYWN GTISKRHRPS SSTTSDATKP 120 EELALVVHDE ESSTTGSPCH AAGSFVVAPV LAGSSTPVQG QPPLAVGGCN AAKEEVGETV 180 PVERKPAMAP APLPENAPAP PGDEASAMDM VCAPMSRIPQ ASMEPDDMPL IDGFDEIDSF 240 LPWFDDW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-21 | 2 | 106 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_72262.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180097.1 | 1e-115 | transcription factor MYB23-like | ||||
TrEMBL | M0YS59 | 0.0 | M0YS59_HORVV; Uncharacterized protein | ||||
STRING | MLOC_72262.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 5e-42 | myb domain protein 87 |