PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_72252.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | G2-like | ||||||||
Protein Properties | Length: 258aa MW: 27224.7 Da PI: 9.4172 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.8 | 7.8e-11 | 233 | 257 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r++W+peLH+rFv a+++LGG++ MLOC_72252.2 233 KARRCWSPELHRRFVAALQHLGGPQ 257 68*********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-8 | 230 | 257 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGSSSAVQKE AVVLGGGGGA GEDHRLRALA ARTMTDSLRA AVARSSSAEK VARLEDCARS 60 LEAEKAKMEV FRRELPISVH LIADVIEWLK DEVAQHRRPA PDQLLAPAPS PSPAPLAKRK 120 AEGVKTEADA SDKRSWMSSA QLWTCGSHSS TSNSNGDSAK KHAQKVANAF MPLNGLPNLA 180 KSLERPEAAA MAVPELSLSS PAIDAPCMAA PSADSSAVTD AGAQSQQQSA QRKARRCWSP 240 ELHRRFVAAL QHLGGPQG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_72252.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375760 | 0.0 | AK375760.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3103I10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151221.1 | 1e-149 | myb family transcription factor EFM-like | ||||
TrEMBL | A0A287QIM3 | 0.0 | A0A287QIM3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_72252.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5582 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 2e-17 | G2-like family protein |