PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_7224.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 440aa MW: 47591 Da PI: 7.3216

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_7224.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.4e-39	102	161	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ MLOC_7224.1 102 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSI 161 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-32	98	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MGQFRAAAGG GGDCLIKLFG KTIPVPDAGA GDVDKDLQHR GSTTAEPKVQ ESAPQDSTGS 60 PPQPEVVDVE DPSAVKNSAA DQQEEEEEQS DTANQKEKLK KPDKILPCPR CSSMDTKFCY 120 YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS ISAASHFLQR IRAALPGDPL 180 CTPVNTNGTV LSFGSDASTL DVVSEQMKHM KELSSVTRTE NTDAPSVGSC AEGWAKGEES 240 SQMNSRERVA ADRSPNFAQH PCMNGAAMWP FSCAPSPAYF TPNVAIPFYP AAAAAYWGCM 300 VPGAWNTPWQ PQPQPQSQCQ SSSPPSAASP VSTMSSCFQS RKHPRDGDEE RDTKGNGKVW 360 VPKTIRIDDV DEVARSSIWS LIGIKGDKVG TDDGRGCKLA RVFDPKDEAK TTTHRVDNSL 420 PFSKGNPAAL SRSVNFQERS

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MGQFRAAAGG GGDCLIKLFG KTIPVPDAGA GDVDKDLQHR GSTTAEPKVQ ESAPQDSTGS  60
PPQPEVVDVE DPSAVKNSAA DQQEEEEEQS DTANQKEKLK KPDKILPCPR CSSMDTKFCY  120
YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS ISAASHFLQR IRAALPGDPL  180
CTPVNTNGTV LSFGSDASTL DVVSEQMKHM KELSSVTRTE NTDAPSVGSC AEGWAKGEES  240
SQMNSRERVA ADRSPNFAQH PCMNGAAMWP FSCAPSPAYF TPNVAIPFYP AAAAAYWGCM  300
VPGAWNTPWQ PQPQPQSQCQ SSSPPSAASP VSTMSSCFQS RKHPRDGDEE RDTKGNGKVW  360
VPKTIRIDDV DEVARSSIWS LIGIKGDKVG TDDGRGCKLA RVFDPKDEAK TTTHRVDNSL  420
PFSKGNPAAL SRSVNFQERS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_7224.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252924	0.0	AK252924.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf174o03, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020166390.1	0.0	cyclic dof factor 1-like
TrEMBL	M0YS30	0.0	M0YS30_HORVV; Uncharacterized protein
STRING	MLOC_7224.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-58	cycling DOF factor 2