PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72230.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 303aa    MW: 33211.3 Da    PI: 6.7332
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72230.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
     MLOC_72230.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPVSTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding43.47.9e-1467113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E+  +v++  +lG+ +W++Ia++++ +Rt++++k++w+++l
     MLOC_72230.1  67 RGNFTSHEEGVIVHLQSLLGNSRWAAIASYLP-RRTDNDIKNYWNTHL 113
                      89******************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129422.681965IPR017930Myb domain
SuperFamilySSF466896.12E-2811109IPR009057Homeodomain-like
SMARTSM007171.4E-121363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
CDDcd001672.03E-111661No hitNo description
Gene3DG3DSA:1.10.10.604.4E-2265117IPR009057Homeodomain-like
PROSITE profilePS5129416.79666117IPR017930Myb domain
SMARTSM007171.8E-1166115IPR001005SANT/Myb domain
PfamPF002491.6E-1167113IPR001005SANT/Myb domain
CDDcd001675.76E-1069113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRPPCCDKL GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PVSTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TSHEEGVIVH LQSLLGNSRW AAIASYLPRR TDNDIKNYWN THLKKKLRKQ  120
QAMGAIFAPP ASSPGTAGDN FDHRHHHDMI SRADGHGAGQ AYINMEVSQL IAGRGQSPFA  180
AAAAEACSSS SYASSVDNIS KLLGSFMKSS PPPPPHNSYD ADDVKPVLPF DSMSGTGSAE  240
LSFTTSVQQP ALMEAGVGYG YDDENETKPQ QHQAPLSSIE KWLFDEAAEL ELSDECYSVP  300
MLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-23141174105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560900.0AK356090.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1029P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187926.10.0transcription factor MYB30-like
SwissprotB3VTV73e-88MYB60_VITVI; Transcription factor MYB60
TrEMBLF2CWT70.0F2CWT7_HORVV; Predicted protein
STRINGMLOC_72230.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.22e-79myb domain protein 96
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]