PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_72013.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 333aa MW: 36579.8 Da PI: 9.0095

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_72013.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99	3.2e-31	54	107	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+ MLOC_72013.1 54 PRLRWTPELHHCFVRAIHRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 107 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-30	50	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.29	50	110	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-15	51	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-23	53	109	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-9	55	106	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MEASKGSDGS SGASASNDDS TVEEEGAARE REDACRGNSL SSSSVRPYVR SKNPRLRWTP 60 ELHHCFVRAI HRLGGQDRAT PKLVLQLMNV RGLSIGHVKS HLQMYRSKKI DDSGQVIGHL 120 PLPHPFHHRQ SGAGAMSSRF GAASWPPWRS CHEPYWPHGR PFLGPRTYNS LEAEAEAAFL 180 RSRAQHVARA ASSNPGLMMQ SGCPSRNDHH AMNHQHKQLL QPTVRNSDDV HVPLDLDLDL 240 SLGIPMPRRE AKRKRSGCSW VKEGPGENGA DEEQAGEIST STMLSLSLFS PGDAPRKMSS 300 TSASDREVDA SVDIKRGKDE HATRRASTLD LTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	253	RREAKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_72013.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373646	0.0	AK373646.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3038H19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183942.1	0.0	transcription factor LUX-like
TrEMBL	F2EBX1	0.0	F2EBX1_HORVV; Predicted protein
STRING	MLOC_72013.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4408	36	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	5e-36	G2-like family protein