PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_72007.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | G2-like | ||||||||
Protein Properties | Length: 403aa MW: 43144.7 Da PI: 6.1445 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.4 | 2.1e-30 | 229 | 285 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse.kAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rF++a++qLGGs+ +AtPk+i+elmkv+gLt+++vkSHLQkYRl+ MLOC_72007.2 229 KPRRCWAPELHRRFLQALQQLGGSHaVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 285 79*********************8747****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.542 | 226 | 287 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.2E-16 | 227 | 287 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 227 | 288 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-25 | 229 | 285 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-6 | 231 | 283 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MEVEVQADRD GARRRLRDYL LALEEERRKI HVFQRELPLC LDLVTQTIEG MKSQMGGAAS 60 EETVSDHDGP VLEEFIPLKP SLSPSSSDDE TSTHAPAPVS NAKAETPPPT PTPTPETKKA 120 MPDWLQSAQL LTWSEPQQSS SLQKVLPCRP VALNATRTGG AFHPFEKEKQ PEAELPASST 180 TAPASSALVG DSGDKATSDT EVHDKDSKDA TEKDTDKDKE GQSSQPNRKP RRCWAPELHR 240 RFLQALQQLG GSHAVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTSRRP SSTAQSSGAA 300 TTTQPAPQFF VVGSCIWVPQ QEYAAAAAAA AAATDATNVA PGSANKVYAP TATLPSGVKP 360 HSKEQSSRRS EGPMSGDTGG VNSDSDNPAM SSSSSQTTSA GHP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00160 | DAP | Transfer from AT1G25550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_72007.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361638 | 0.0 | AK361638.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1145I13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198678.1 | 0.0 | myb family transcription factor EFM-like | ||||
Refseq | XP_020198679.1 | 0.0 | myb family transcription factor EFM-like | ||||
Swissprot | Q6Z869 | 1e-129 | NIGT1_ORYSJ; Transcription factor NIGT1 | ||||
TrEMBL | A0A287H9U4 | 0.0 | A0A287H9U4_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287HA17 | 0.0 | A0A287HA17_HORVV; Uncharacterized protein | ||||
STRING | MLOC_72007.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6470 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 1e-53 | G2-like family protein |
Publications ? help Back to Top | |||
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