PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72007.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 359aa    MW: 37770.5 Da    PI: 6.1856
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72007.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.9e-32186241156
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                   kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  MLOC_72007.1 186 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 241
                   79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.822183243IPR017930Myb domain
SuperFamilySSF466895.91E-17184243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28184244IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-27186241IPR006447Myb domain, plants
PfamPF002491.5E-6188239IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSAAIEGMKS QMGGAASEET VSDHDGPVLE EFIPLKPSLS PSSSDDETST HAPAPVSNAK  60
AETPPPTPTP TPETKKAMPD WLQSAQLLTW SEPQQSSSLQ KVLPCRPVAL NATRTGGAFH  120
PFEKEKQPEA ELPASSTTAP ASSALVGDSG DKATSDTEVH DKDSKDATEK DTDKDKEGQS  180
SQPNRKPRRC WAPELHRRFL QALQQLGGSH VATPKQIREL MKVDGLTNDE VKSHLQKYRL  240
HTSRRPSSTA QSSGAATTTQ PAPQFFVVGS CIWVPQQEYA AAAAAAAAAT DATNVAPGSA  300
NKVYAPTATL PSGVKPHSKE QSSRRSEGPM SGDTGGVNSD SDNPAMSSSS SQTTSAGHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-13186239255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-13186239255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-13186239255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-13186239255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-13186239255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-13186239255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-13186239255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-13186239255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72007.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3616380.0AK361638.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1145I13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198678.10.0myb family transcription factor EFM-like
RefseqXP_020198679.10.0myb family transcription factor EFM-like
SwissprotQ6Z8691e-100NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLA0A287HA040.0A0A287HA04_HORVV; Uncharacterized protein
STRINGMLOC_72007.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-43G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]