PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_71829.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 69aa MW: 8196.44 Da PI: 11.1549 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 27.4 | 1.1e-08 | 3 | 69 | 2 | 62 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgC 62 Y+ YA++ GF vr k+s+ +ge +++ +v + g + ++k + err+++++rt+C MLOC_71829.1 3 HYKMYARQKGFGVRYCFRKRSEASGELIRASLVYHRAGLKIKRKVDtqnpqpIAPERRRNTTERTNC 69 7*************************************9999998878888878899999999**99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-6 | 3 | 69 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
EKHYKMYARQ KGFGVRYCFR KRSEASGELI RASLVYHRAG LKIKRKVDTQ NPQPIAPERR 60 RNTTERTNC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_71829.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239385.1 | 9e-18 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A287FMN9 | 2e-41 | A0A287FMN9_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287KSL3 | 1e-41 | A0A287KSL3_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287QAA0 | 9e-42 | A0A287QAA0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_71829.1 | 1e-44 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |