PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_71770.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 258aa    MW: 29488 Da    PI: 4.9344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_71770.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.7e-07427123
                  EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                  y+C  Cg++F+++ +L rH r  H
  MLOC_71770.1  4 YSCAVCGRRFPTRPDLARHFRQlH 27
                  99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.79E-5330No hitNo description
Gene3DG3DSA:3.30.160.602.3E-4330IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.131432IPR007087Zinc finger, C2H2
SMARTSM003554.1E-4427IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280627IPR007087Zinc finger, C2H2
CDDcd061672.09E-747154No hitNo description
Gene3DG3DSA:3.40.50.10106.8E-575143IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
PVPYSCAVCG RRFPTRPDLA RHFRQLHERE RNKKLGRLRS LKGKKRQKFR ERYISGNTKY  60
QDAARELLTP KVGYGLDSEL RRAGVHVRTV PDKPQAADQA LKRQVKHAIA CGVDWVVLVS  120
DDSDFTDTVR NARAAALRMV VVGDGCRALG KVADIWLPWD SVQNGEVDEE MMRSGKVPQF  180
RYEEHDEQDD DDEFIVDWDT NELDDVVDDI VTSRTKVFGA TTMSAFAEED IVDGVLGLRQ  240
KEDDMLWSRD DEDEDGYL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_71770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3596000.0AK359600.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1099L22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173465.10.0uncharacterized protein LOC109759006
RefseqXP_020173471.10.0uncharacterized protein LOC109759006
TrEMBLF2D6T80.0F2D6T8_HORVV; Predicted protein (Fragment)
STRINGMLOC_71770.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-58C2H2-like zinc finger protein